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 [BibTeX] [Marc21]
Estimation of Divergence-Free 3D Cardiac Blood Flow in a Zebrafish Larva Using Multi-View Microscopy
Type of publication: Conference paper
Citation: Chan_ISBI_2015
Publication status: Published
Booktitle: Biomedical Imaging (ISBI), 2015 IEEE 12th International Symposium on
Year: 2015
Month: April
Pages: 385-388
Location: Brooklyn, NY, USA
Organization: IEEE
ISSN: 1945-7928
DOI: 10.1109/ISBI.2015.7163893
Abstract: Conventional fluid flow estimation methods for in vivo optical microscopy are limited to two-dimensions and are only able to estimate the components of flow parallel to the imaging plane. This limits the study of flow in more intricate biological structures, such as the embryonic zebrafish heart, where flow is three-dimensional. To measure three-dimensional blood flow, we propose an algorithm to reconstruct a 3D, divergence-free flow map from multiple 2D flow estimates computed from image stacks captured from different views. This allows us to estimate the out-of-plane velocity component that is normally lost with single-view imaging. This paper describes our 3D flow reconstruction algorithm, evaluates its performance on a simulated velocity field, and demonstrates its application to in vivo cardiac imaging within a live zebrafish larva.
Projects Idiap
Authors Chan, Kevin G.
Liebling, Michael
Added by: [UNK]
Total mark: 0
  • Chan_ISBI_2015.pdf