Publications of project COMPBIO
2023
| Efficient compressed sensing reconstruction for 3D fluorescence microscopy using OptoMechanical Modulation Tomography (OMMT) with a 1+2D regularization, and , in: Optics Express, 31(20):31718-31733, 2023 |
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| PAAQ: Paired Alternating AcQuisitions for Virtual High Frame Rate Multichannel Cardiac Fluorescence Microscopy, , , and , in: Biological Imaging, 3:e20, 2023 |
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| Practical computational imaging by use of spatiotemporal light modulation: from simulations to applications in biological microscopy, , EPFL, 2023 |
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2022
| HyperMixer: An MLP-based Green AI Alternative to Transformers, , , , , , and , in: arxiv, 2022 |
| Mechanical Artifacts in Optical Projection Tomography: Classification and Automatic Calibration, , , , and , in: Opt. Continuum, 1(12):2577--2589, 2022 |
[DOI] |
2021
| Estimating Nonplanar Flow from 2D Motion-blurred Widefield Microscopy Images via Deep Learning, and , in: International Symposium on Biomedical Imaging, 2021, 2021 |
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| Optics Versus Computation: Influence of Illumination and Reconstruction Model Accuracy in Focal-Plane-Scanning Optical Projection Tomography, and , in: 2021 IEEE 18th International Symposium on Biomedical Imaging (ISBI), Nice, France, pages 567-570, IEEE, 2021 |
[DOI] |
2020
| Aliasing mitigation in optical microscopy of dynamic biological samples by use of temporally modulated color illumination and a standard RGB camera, and , in: Journal of Biomedical Optics, 25(10):106505, 2020 |
[DOI] [URL] |
| DeepFocus: a Few-shot Microscope Slide Auto-Focus using a Sample Invariant CNN-based Sharpness Function, and , in: International Symposium on Biomedical Imaging, 2020 |
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| Free annotated data for deep learning in microscopy? A hitchhiker's guide, and , in: Photoniques(104):30-33, 2020 |
[DOI] [URL] |
| Reconstruction of image sequences from ungated and scanning-aberrated laser scanning microscopy images of the beating heart, , , and , in: IEEE Transactions on Computational Imaging, 6:385--395, 2020 |
[DOI] [URL] |
| Temporal resolution doubling in fluorescence light-sheet microscopy via a hue-encoded shutter and regularization, , , and , in: OSA Continuum, 3(8), 2020 |
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2019
| Generalized temporal sampling with active illumination in optical microscopy, and , in: Proceeding of the SPIE Conference Optics and Photonics, Wavelets and Sparsity XVIII, SPIE, San Diego, California, United States, SPIE, 2019 |
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| Temporal Super-Resolution Microscopy Using a Hue-Encoded Shutter, , , and , in: Optical Society of America Biomedical Optics Express, 10(09):4727-4741, 2019 |
[DOI] [URL] |