Keywords:
- Antibiotic discovery
- Cancer Genomics
- Cytokine stormExplainable AIHealthcare predictive analysisMachine learning for diagnosis
- deep learning
- Domain Knowledge Integration
- evaluation
- Explainable AI
- Factual knowledge
- Graph Neural Networks
- Large Language Models
- Multi-omics Data
- Prompting
- Relation Extraction
- Retrieval-augmented generation
- Sparse Neural Networks
- Synthetic Dataset
Publications of Magdalena Wysocka sorted by journal and type
BMC Bioinformatics
| A systematic review of biologically-informed deep learning models for cancer: fundamental trends for encoding and interpreting oncology data, , , , and , in: BMC Bioinformatics, 24(198), 2023 |
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Computational Linguistics
| Relation Extraction in Underexplored Biomedical Domains: A Diversity-optimized Sampling and Synthetic Data Generation Approach, , and , in: Computational Linguistics, Volume 50(Issue 3):953–1000, 2024 |
[DOI] [URL] |
Journal of Biomedical Informatics
| Large Language Models, scientific knowledge and factuality: A framework to streamline human expert evaluation, , , , and , in: Journal of Biomedical Informatics(158), 2024 |
[DOI] [URL] |
| Meta-analysis informed machine learning: Supporting cytokine storm detection during CAR-T cell Therapy, , , , , , , , , and , in: Journal of Biomedical Informatics, 142, 2023 |
[DOI] |
Annual Conference of the Nations of the Americas Chapter of the Association for Computational Linguistics (2025)
| SylloBio-NLI: Evaluating Large Language Models on Biomedical Syllogistic Reasoning, , , , and , in: Annual Conference of the Nations of the Americas Chapter of the Association for Computational Linguistics, 2025 |
Proceedings of the 62nd Annual Meeting of the Association for Computational Linguistics (2024)
| An LLM-based Knowledge Synthesis and Scientific Reasoning Framework for Biomedical Discovery, , , , , , , and , in: Proceedings of the 62nd Annual Meeting of the Association for Computational Linguistics, ACL, Bangkok, Thailand, pages 355-364, 2024 |
[DOI] [URL] |
63rd Annual Meeting of the Association for Computational Linguistics (2025)
| Accelerating Antibiotic Discovery with Large Language Models and Knowledge Graphs, , , and , in: 63rd Annual Meeting of the Association for Computational Linguistics, Vienna, pages 693–705, Association for Computational Linguistics, 2025 |
[DOI] [URL] |