Keywords:
- 3D blood flow estimation
- active illumination
- approximations
- artifact removal
- Asymmetry
- B-splines
- blind deconvolution
- Cardiac imaging
- CNN
- Coded aperture imaging
- coded illumination
- Compressed sensing
- computational imaging
- contrast
- Convolution Neural Network
- Convolutional Neural Networks
- deconvolution
- depth from focus
- divergencefree flow
- dynamic time warping
- embryonic imaging
- filtered backprojection
- Fluorescence Microscopy
- Fluorescence tomography
- focus estimation
- Generalized sampling
- Generative Adversarial Networks
- Heartbeat
- image
- image denoising
- image reconstruction
- Image registration
- image synthesis
- inverse problems
- inverse-problems
- Light Sheet Fluorescence Microscopy
- live microscopy
- microscopy
- model
- motion blur
- multi-dimensional registration
- multi-view microscopy
- optical microscopy
- Optical projection tomography
- Periodicity
- point spread function
- point spread function estimation
- point-spread-function
- quasi-periodic
- reconstruction
- retrospective gating
- spectral imaging
- spectral unmixing
- Structured illumination
- Superresolution
- Temporal superresolution
- thermal imaging
- thermal imaging cameras
- time registration
- tomography.
- wavelets
- Zebrafish
Publications of Michael Liebling
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2023
| Efficient compressed sensing reconstruction for 3D fluorescence microscopy using OptoMechanical Modulation Tomography (OMMT) with a 1+2D regularization, and , in: Optics Express, 31(20):31718-31733, 2023 |
[DOI] |
| From Nano to Macro: An overview of the IEEE Bio Image and Signal Processing Technical Committee, , , , , , , , and , in: IEEE Signal Processing Magazine, 40(4):61-71, 2023 |
[DOI] [URL] |
| Idiap Scientific Report 2022, , , , , , , , , , , , , , , , , and , Idiap-RR-05-2023 |
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| Multi-image deconvolution of thermal images with a boundary condition weighting scheme, , , , and , in: Target and Background Signatures IX, International Society for Optics and Photonics, Amsterdam, pages 149-158, SPIE, 2023 |
[DOI] [URL] |
| PAAQ: Paired Alternating AcQuisitions for Virtual High Frame Rate Multichannel Cardiac Fluorescence Microscopy, , , and , in: Biological Imaging, 3:e20, 2023 |
[DOI] |
2022
| Local estimation of parametric point spread functions in thermal images via convolutional neural networks, , , and , in: SPIE sensors + imaging, Target and Background Signatures VIII, Berlin, Germany, pages 1227009 1--8, SPIE, 2022 |
[DOI] [URL] |
2021
| Estimating Nonplanar Flow from 2D Motion-blurred Widefield Microscopy Images via Deep Learning, and , in: International Symposium on Biomedical Imaging, 2021, 2021 |
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| Optics Versus Computation: Influence of Illumination and Reconstruction Model Accuracy in Focal-Plane-Scanning Optical Projection Tomography, and , in: 2021 IEEE 18th International Symposium on Biomedical Imaging (ISBI), Nice, France, pages 567-570, IEEE, 2021 |
[DOI] |
| Perspectives and limitations of visible-thermal image pair synthesis via generative adversarial networks, , , , and , in: Security + Defence, Target and Background Signatures VII, Proc. of SPIE, online only, pages 1186509-1--1186509-8, SPIE, 2021 |
[DOI] [URL] |
| Unequivocal cardiac phase sorting from alternating ramp- and pulse-illuminated microscopy image sequences, , , , and , in: 2021 IEEE 18th International Symposium on Biomedical Imaging (ISBI), pages 868-872, 2021 |
[DOI] [URL] |
2020
| Aliasing mitigation in optical microscopy of dynamic biological samples by use of temporally modulated color illumination and a standard RGB camera, and , in: Journal of Biomedical Optics, 25(10):106505, 2020 |
[DOI] [URL] |
| DeepFocus: a Few-shot Microscope Slide Auto-Focus using a Sample Invariant CNN-based Sharpness Function, and , in: International Symposium on Biomedical Imaging, 2020 |
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| Free annotated data for deep learning in microscopy? A hitchhiker's guide, and , in: Photoniques(104):30-33, 2020 |
[DOI] [URL] |
| Reconstruction of image sequences from ungated and scanning-aberrated laser scanning microscopy images of the beating heart, , , and , in: IEEE Transactions on Computational Imaging, 6:385--395, 2020 |
[DOI] [URL] |
| Spatially-Variant CNN-Based Point Spread Function Estimation for Blind Deconvolution and Depth Estimation in Optical Microscopy, and , in: IEEE Transactions on Image Processing, 29:5848 - 5861, 2020 |
[DOI] |
| Temporal resolution doubling in fluorescence light-sheet microscopy via a hue-encoded shutter and regularization, , , and , in: OSA Continuum, 3(8), 2020 |
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2019
| Generalized temporal sampling with active illumination in optical microscopy, and , in: Proceeding of the SPIE Conference Optics and Photonics, Wavelets and Sparsity XVIII, SPIE, San Diego, California, United States, SPIE, 2019 |
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| Multi-Spectral Widefield Microscopy of the Beating Heart through Post-Acquisition Synchronization and Unmixing, , , and , in: 2019 IEEE 16th International Symposium on Biomedical Imaging (ISBI 2019), Venice, Italy, pages 1382-1385, 2019 |
[DOI] |
| Reconstruction of image sequences from ungated and scanning-aberrated laser scanning microscopy images of the beating heart, , , and , Idiap-RR-18-2019 |
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| Temporal Super-Resolution Microscopy Using a Hue-Encoded Shutter, , , and , in: Optical Society of America Biomedical Optics Express, 10(09):4727-4741, 2019 |
[DOI] [URL] |
| Virtual High-Framerate Microscopy of the Beating Heart via Sorting of Still Images, , , , and , Idiap-RR-04-2019 |
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| Virtual High-Framerate Microscopy of the Beating Heart via Sorting of Still Images, , , , and , in: 2019 IEEE 16th International Symposium on Biomedical Imaging, pages 312--315, 2019 |
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2018
| Semi-blind spatially-variant deconvolution in optical microscopy with local Point Spread Function estimation by use of Convolutional Neural Networks, and , Idiap-RR-07-2018 |
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| Semi-Blind Spatially-Variant Deconvolution in Optical Microscopy with Local Point Spread Function Estimation by Use of Convolutional Neural Networks, and , in: 2018 25th IEEE International Conference on Image Processing (ICIP), pages 3818-3822, IEEE, 2018 |
[DOI] |
2017
| Direct inversion algorithm for focal plane scanning optical projection tomography, and , in: Biomedical Optics Express, 2017 |
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2016
| A Point-Spread-Function-Aware Filtered Backprojection Algorithm for Focal-Plane-Scanning Optical Projection Tomography, and , in: 2016 IEEE International Symposium on Biomedical Imaging, 2016 |
| Simultaneous temporal superresolution and denoising for cardiac fluorescence microscopy, , , and , in: IEEE Transactions on Computational Imaging, 2016 |
[DOI] [URL] |
2015
| Dynamic structure and protein expression of the live embryonic heart captured by 2-photon light sheet microscopy and retrospective registration, , , , , and , in: Biomedical Optics Express, 6(6):2056-2066, 2015 |
[DOI] [URL] |
| Estimation of Divergence-Free 3D Cardiac Blood Flow in a Zebrafish Larva Using Multi-View Microscopy, and , in: Biomedical Imaging (ISBI), 2015 IEEE 12th International Symposium on, IEEE, Brooklyn, NY, USA, pages 385-388, 2015 |
[DOI] |
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